/*M/////////////////////////////////////////////////////////////////////////////////////// // // IMPORTANT: READ BEFORE DOWNLOADING, COPYING, INSTALLING OR USING. // // By downloading, copying, installing or using the software you agree to this license. // If you do not agree to this license, do not download, install, // copy or use the software. // // // License Agreement // For Open Source Computer Vision Library // // Copyright (C) 2013, OpenCV Foundation, all rights reserved. // Third party copyrights are property of their respective owners. // // Redistribution and use in source and binary forms, with or without modification, // are permitted provided that the following conditions are met: // // * Redistribution's of source code must retain the above copyright notice, // this list of conditions and the following disclaimer. // // * Redistribution's in binary form must reproduce the above copyright notice, // this list of conditions and the following disclaimer in the documentation // and/or other materials provided with the distribution. // // * The name of the copyright holders may not be used to endorse or promote products // derived from this software without specific prior written permission. // // This software is provided by the copyright holders and contributors "as is" and // any express or implied warranties, including, but not limited to, the implied // warranties of merchantability and fitness for a particular purpose are disclaimed. // In no event shall the Intel Corporation or contributors be liable for any direct, // indirect, incidental, special, exemplary, or consequential damages // (including, but not limited to, procurement of substitute goods or services; // loss of use, data, or profits; or business interruption) however caused // and on any theory of liability, whether in contract, strict liability, // or tort (including negligence or otherwise) arising in any way out of // the use of this software, even if advised of the possibility of such damage. // //M*/ //Copyright (C) 2011 Carl Rogers //Released under MIT License //license available in LICENSE file, or at http://www.opensource.org/licenses/mit-license.php #include"cnpy.h" #include #include #include #include #include char cnpy::BigEndianTest() { union { unsigned char x[2]; short y; }; x[0] = 1; x[1] = 0; return y == 1 ? '<' : '>'; } char cnpy::map_type(const std::type_info& t) { if(t == typeid(float) ) return 'f'; if(t == typeid(double) ) return 'f'; if(t == typeid(long double) ) return 'f'; if(t == typeid(int) ) return 'i'; if(t == typeid(char) ) return 'i'; if(t == typeid(short) ) return 'i'; if(t == typeid(long) ) return 'i'; if(t == typeid(long long) ) return 'i'; if(t == typeid(unsigned char) ) return 'u'; if(t == typeid(unsigned short) ) return 'u'; if(t == typeid(unsigned long) ) return 'u'; if(t == typeid(unsigned long long) ) return 'u'; if(t == typeid(unsigned int) ) return 'u'; if(t == typeid(bool) ) return 'b'; if(t == typeid(std::complex) ) return 'c'; if(t == typeid(std::complex) ) return 'c'; if(t == typeid(std::complex) ) return 'c'; else return '?'; } template<> std::vector& cnpy::operator+=(std::vector& lhs, const std::string rhs) { lhs.insert(lhs.end(),rhs.begin(),rhs.end()); return lhs; } template<> std::vector& cnpy::operator+=(std::vector& lhs, const char* rhs) { //write in little endian size_t len = strlen(rhs); lhs.reserve(len); for(size_t byte = 0; byte < len; byte++) { lhs.push_back(rhs[byte]); } return lhs; } void cnpy::parse_npy_header(FILE* fp, unsigned int& word_size, unsigned int*& shape, unsigned int& ndims, bool& fortran_order) { char buffer[256]; size_t res = fread(buffer,sizeof(char),11,fp); if(res != 11) throw std::runtime_error("parse_npy_header: failed fread"); std::string header = fgets(buffer,256,fp); cnpy_assert(header[header.size()-1] == '\n'); size_t loc1, loc2; //fortran order loc1 = header.find("fortran_order")+16; fortran_order = (header.substr(loc1,5) == "True" ? true : false); //shape loc1 = header.find("("); loc2 = header.find(")"); std::string str_shape = header.substr(loc1+1,loc2-loc1-1); if(str_shape[str_shape.size()-1] == ',') ndims = 1; else ndims = (unsigned)std::count(str_shape.begin(),str_shape.end(),',')+1; shape = new unsigned int[ndims]; for(unsigned int i = 0;i < ndims;i++) { loc1 = str_shape.find(","); shape[i] = atoi(str_shape.substr(0,loc1).c_str()); str_shape = str_shape.substr(loc1+1); } //endian, word size, data type //byte order code | stands for not applicable. //not sure when this applies except for byte array loc1 = header.find("descr")+9; bool littleEndian = (header[loc1] == '<' || header[loc1] == '|' ? true : false); cnpy_assert(littleEndian); //char type = header[loc1+1]; //assert(type == map_type(T)); std::string str_ws = header.substr(loc1+2); loc2 = str_ws.find("'"); word_size = atoi(str_ws.substr(0,loc2).c_str()); } void cnpy::parse_zip_footer(FILE* fp, unsigned short& nrecs, unsigned int& global_header_size, unsigned int& global_header_offset) { std::vector footer(22); fseek(fp,-22,SEEK_END); size_t res = fread(&footer[0],sizeof(char),22,fp); if(res != 22) throw std::runtime_error("parse_zip_footer: failed fread"); unsigned short disk_no, disk_start, nrecs_on_disk, comment_len; disk_no = *(unsigned short*) &footer[4]; disk_start = *(unsigned short*) &footer[6]; nrecs_on_disk = *(unsigned short*) &footer[8]; nrecs = *(unsigned short*) &footer[10]; global_header_size = *(unsigned int*) &footer[12]; global_header_offset = *(unsigned int*) &footer[16]; comment_len = *(unsigned short*) &footer[20]; cnpy_assert(disk_no == 0); cnpy_assert(disk_start == 0); cnpy_assert(nrecs_on_disk == nrecs); cnpy_assert(comment_len == 0); } cnpy::NpyArray load_the_npy_file(FILE* fp) { unsigned int* shape; unsigned int ndims, word_size; bool fortran_order; cnpy::parse_npy_header(fp,word_size,shape,ndims,fortran_order); unsigned long long size = 1; //long long so no overflow when multiplying by word_size for(unsigned int i = 0;i < ndims;i++) size *= shape[i]; cnpy::NpyArray arr; arr.word_size = word_size; arr.shape = std::vector(shape,shape+ndims); delete[] shape; arr.data = new char[size*word_size]; arr.fortran_order = fortran_order; size_t nread = fread(arr.data,word_size,size,fp); if(nread != size) throw std::runtime_error("load_the_npy_file: failed fread"); return arr; } cnpy::npz_t cnpy::npz_load(std::string fname) { FILE* fp = fopen(fname.c_str(),"rb"); if(!fp) printf("npz_load: Error! Unable to open file %s!\n",fname.c_str()); cnpy_assert(fp); cnpy::npz_t arrays; while(1) { std::vector local_header(30); size_t headerres = fread(&local_header[0],sizeof(char),30,fp); if(headerres != 30) throw std::runtime_error("npz_load: failed fread"); //if we've reached the global header, stop reading if(local_header[2] != 0x03 || local_header[3] != 0x04) break; //read in the variable name unsigned short name_len = *(unsigned short*) &local_header[26]; std::string varname(name_len,' '); size_t vname_res = fread(&varname[0],sizeof(char),name_len,fp); if(vname_res != name_len) throw std::runtime_error("npz_load: failed fread"); //erase the lagging .npy varname.erase(varname.end()-4,varname.end()); //read in the extra field unsigned short extra_field_len = *(unsigned short*) &local_header[28]; if(extra_field_len > 0) { std::vector buff(extra_field_len); size_t efield_res = fread(&buff[0],sizeof(char),extra_field_len,fp); if(efield_res != extra_field_len) throw std::runtime_error("npz_load: failed fread"); } arrays[varname] = load_the_npy_file(fp); } fclose(fp); return arrays; } cnpy::NpyArray cnpy::npz_load(std::string fname, std::string varname) { FILE* fp = fopen(fname.c_str(),"rb"); if(!fp) { throw std::runtime_error("npz_load: Error! Unable to open file " + fname + "!\n"); } while(1) { std::vector local_header(30); size_t header_res = fread(&local_header[0],sizeof(char),30,fp); if(header_res != 30) throw std::runtime_error("npz_load: failed fread"); //if we've reached the global header, stop reading if(local_header[2] != 0x03 || local_header[3] != 0x04) break; //read in the variable name unsigned short name_len = *(unsigned short*) &local_header[26]; std::string vname(name_len,' '); size_t vname_res = fread(&vname[0],sizeof(char),name_len,fp); if(vname_res != name_len) throw std::runtime_error("npz_load: failed fread"); vname.erase(vname.end()-4,vname.end()); //erase the lagging .npy //read in the extra field unsigned short extra_field_len = *(unsigned short*) &local_header[28]; fseek(fp,extra_field_len,SEEK_CUR); //skip past the extra field if(vname == varname) { NpyArray array = load_the_npy_file(fp); fclose(fp); return array; } else { //skip past the data unsigned int size = *(unsigned int*) &local_header[22]; fseek(fp,size,SEEK_CUR); } } fclose(fp); throw std::runtime_error("npz_load: Error! Variable name " + varname + " not found in " + fname + "!\n"); } cnpy::NpyArray cnpy::npy_load(std::string fname) { FILE* fp = fopen(fname.c_str(), "rb"); if(!fp) { throw std::runtime_error("npy_load: Error! Unable to open file " + fname + "!\n"); } NpyArray arr = load_the_npy_file(fp); fclose(fp); return arr; }