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462 lines
16 KiB
C++
462 lines
16 KiB
C++
/*M///////////////////////////////////////////////////////////////////////////////////////
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//
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// IMPORTANT: READ BEFORE DOWNLOADING, COPYING, INSTALLING OR USING.
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//
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// By downloading, copying, installing or using the software you agree to this license.
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// If you do not agree to this license, do not download, install,
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// copy or use the software.
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//
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//
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// License Agreement
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// For Open Source Computer Vision Library
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//
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// Copyright (C) 2000-2018, Intel Corporation, all rights reserved.
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// Copyright (C) 2009, Willow Garage Inc., all rights reserved.
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// Copyright (C) 2013, OpenCV Foundation, all rights reserved.
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// Third party copyrights are property of their respective owners.
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//
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// Redistribution and use in source and binary forms, with or without modification,
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// are permitted provided that the following conditions are met:
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//
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// * Redistribution's of source code must retain the above copyright notice,
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// this list of conditions and the following disclaimer.
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//
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// * Redistribution's in binary form must reproduce the above copyright notice,
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// this list of conditions and the following disclaimer in the documentation
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// and/or other materials provided with the distribution.
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//
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// * The name of the copyright holders may not be used to endorse or promote products
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// derived from this software without specific prior written permission.
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//
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// This software is provided by the copyright holders and contributors "as is" and
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// any express or implied warranties, including, but not limited to, the implied
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// warranties of merchantability and fitness for a particular purpose are disclaimed.
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// In no event shall the Intel Corporation or contributors be liable for any direct,
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// indirect, incidental, special, exemplary, or consequential damages
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// (including, but not limited to, procurement of substitute goods or services;
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// loss of use, data, or profits; or business interruption) however caused
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// and on any theory of liability, whether in contract, strict liability,
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// or tort (including negligence or otherwise) arising in any way out of
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// the use of this software, even if advised of the possibility of such damage.
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//
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//M*/
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#include "precomp.hpp"
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#include <opencv2/core/utils/configuration.private.hpp>
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#include <opencv2/core/hal/hal.hpp>
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////////////////////////////////////////// kmeans ////////////////////////////////////////////
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namespace cv
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{
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static int CV_KMEANS_PARALLEL_GRANULARITY = (int)utils::getConfigurationParameterSizeT("OPENCV_KMEANS_PARALLEL_GRANULARITY", 1000);
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static void generateRandomCenter(int dims, const Vec2f* box, float* center, RNG& rng)
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{
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float margin = 1.f/dims;
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for (int j = 0; j < dims; j++)
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center[j] = ((float)rng*(1.f+margin*2.f)-margin)*(box[j][1] - box[j][0]) + box[j][0];
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}
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class KMeansPPDistanceComputer : public ParallelLoopBody
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{
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public:
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KMeansPPDistanceComputer(float *tdist2_, const Mat& data_, const float *dist_, int ci_) :
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tdist2(tdist2_), data(data_), dist(dist_), ci(ci_)
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{ }
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void operator()( const cv::Range& range ) const CV_OVERRIDE
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{
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CV_TRACE_FUNCTION();
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const int begin = range.start;
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const int end = range.end;
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const int dims = data.cols;
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for (int i = begin; i<end; i++)
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{
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tdist2[i] = std::min(hal::normL2Sqr_(data.ptr<float>(i), data.ptr<float>(ci), dims), dist[i]);
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}
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}
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private:
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KMeansPPDistanceComputer& operator=(const KMeansPPDistanceComputer&); // = delete
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float *tdist2;
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const Mat& data;
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const float *dist;
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const int ci;
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};
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/*
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k-means center initialization using the following algorithm:
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Arthur & Vassilvitskii (2007) k-means++: The Advantages of Careful Seeding
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*/
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static void generateCentersPP(const Mat& data, Mat& _out_centers,
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int K, RNG& rng, int trials)
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{
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CV_TRACE_FUNCTION();
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const int dims = data.cols, N = data.rows;
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cv::AutoBuffer<int, 64> _centers(K);
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int* centers = &_centers[0];
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cv::AutoBuffer<float, 0> _dist(N*3);
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float* dist = &_dist[0], *tdist = dist + N, *tdist2 = tdist + N;
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double sum0 = 0;
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centers[0] = (unsigned)rng % N;
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for (int i = 0; i < N; i++)
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{
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dist[i] = hal::normL2Sqr_(data.ptr<float>(i), data.ptr<float>(centers[0]), dims);
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sum0 += dist[i];
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}
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for (int k = 1; k < K; k++)
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{
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double bestSum = DBL_MAX;
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int bestCenter = -1;
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for (int j = 0; j < trials; j++)
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{
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double p = (double)rng*sum0;
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int ci = 0;
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for (; ci < N - 1; ci++)
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{
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p -= dist[ci];
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if (p <= 0)
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break;
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}
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parallel_for_(Range(0, N),
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KMeansPPDistanceComputer(tdist2, data, dist, ci),
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(double)divUp((size_t)(dims * N), CV_KMEANS_PARALLEL_GRANULARITY));
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double s = 0;
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for (int i = 0; i < N; i++)
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{
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s += tdist2[i];
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}
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if (s < bestSum)
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{
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bestSum = s;
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bestCenter = ci;
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std::swap(tdist, tdist2);
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}
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}
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if (bestCenter < 0)
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CV_Error(Error::StsNoConv, "kmeans: can't update cluster center (check input for huge or NaN values)");
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centers[k] = bestCenter;
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sum0 = bestSum;
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std::swap(dist, tdist);
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}
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for (int k = 0; k < K; k++)
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{
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const float* src = data.ptr<float>(centers[k]);
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float* dst = _out_centers.ptr<float>(k);
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for (int j = 0; j < dims; j++)
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dst[j] = src[j];
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}
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}
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template<bool onlyDistance>
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class KMeansDistanceComputer : public ParallelLoopBody
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{
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public:
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KMeansDistanceComputer( double *distances_,
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int *labels_,
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const Mat& data_,
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const Mat& centers_)
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: distances(distances_),
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labels(labels_),
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data(data_),
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centers(centers_)
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{
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}
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void operator()(const Range& range) const CV_OVERRIDE
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{
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CV_TRACE_FUNCTION();
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const int begin = range.start;
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const int end = range.end;
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const int K = centers.rows;
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const int dims = centers.cols;
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for (int i = begin; i < end; ++i)
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{
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const float *sample = data.ptr<float>(i);
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if (onlyDistance)
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{
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const float* center = centers.ptr<float>(labels[i]);
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distances[i] = hal::normL2Sqr_(sample, center, dims);
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continue;
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}
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else
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{
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int k_best = 0;
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double min_dist = DBL_MAX;
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for (int k = 0; k < K; k++)
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{
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const float* center = centers.ptr<float>(k);
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const double dist = hal::normL2Sqr_(sample, center, dims);
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if (min_dist > dist)
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{
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min_dist = dist;
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k_best = k;
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}
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}
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distances[i] = min_dist;
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labels[i] = k_best;
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}
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}
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}
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private:
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KMeansDistanceComputer& operator=(const KMeansDistanceComputer&); // = delete
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double *distances;
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int *labels;
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const Mat& data;
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const Mat& centers;
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};
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}
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double cv::kmeans( InputArray _data, int K,
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InputOutputArray _bestLabels,
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TermCriteria criteria, int attempts,
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int flags, OutputArray _centers )
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{
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CV_INSTRUMENT_REGION();
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const int SPP_TRIALS = 3;
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Mat data0 = _data.getMat();
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const bool isrow = data0.rows == 1;
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const int N = isrow ? data0.cols : data0.rows;
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const int dims = (isrow ? 1 : data0.cols)*data0.channels();
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const int type = data0.depth();
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attempts = std::max(attempts, 1);
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CV_Assert( data0.dims <= 2 && type == CV_32F && K > 0 );
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CV_CheckGE(N, K, "Number of clusters should be more than number of elements");
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Mat data(N, dims, CV_32F, data0.ptr(), isrow ? dims * sizeof(float) : static_cast<size_t>(data0.step));
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_bestLabels.create(N, 1, CV_32S, -1, true);
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Mat _labels, best_labels = _bestLabels.getMat();
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if (flags & CV_KMEANS_USE_INITIAL_LABELS)
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{
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CV_Assert( (best_labels.cols == 1 || best_labels.rows == 1) &&
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best_labels.cols*best_labels.rows == N &&
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best_labels.type() == CV_32S &&
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best_labels.isContinuous());
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best_labels.reshape(1, N).copyTo(_labels);
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for (int i = 0; i < N; i++)
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{
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CV_Assert((unsigned)_labels.at<int>(i) < (unsigned)K);
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}
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}
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else
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{
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if (!((best_labels.cols == 1 || best_labels.rows == 1) &&
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best_labels.cols*best_labels.rows == N &&
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best_labels.type() == CV_32S &&
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best_labels.isContinuous()))
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{
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_bestLabels.create(N, 1, CV_32S);
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best_labels = _bestLabels.getMat();
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}
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_labels.create(best_labels.size(), best_labels.type());
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}
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int* labels = _labels.ptr<int>();
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Mat centers(K, dims, type), old_centers(K, dims, type), temp(1, dims, type);
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cv::AutoBuffer<int, 64> counters(K);
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cv::AutoBuffer<double, 64> dists(N);
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RNG& rng = theRNG();
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if (criteria.type & TermCriteria::EPS)
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criteria.epsilon = std::max(criteria.epsilon, 0.);
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else
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criteria.epsilon = FLT_EPSILON;
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criteria.epsilon *= criteria.epsilon;
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if (criteria.type & TermCriteria::COUNT)
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criteria.maxCount = std::min(std::max(criteria.maxCount, 2), 100);
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else
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criteria.maxCount = 100;
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if (K == 1)
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{
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attempts = 1;
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criteria.maxCount = 2;
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}
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cv::AutoBuffer<Vec2f, 64> box(dims);
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if (!(flags & KMEANS_PP_CENTERS))
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{
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{
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const float* sample = data.ptr<float>(0);
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for (int j = 0; j < dims; j++)
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box[j] = Vec2f(sample[j], sample[j]);
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}
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for (int i = 1; i < N; i++)
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{
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const float* sample = data.ptr<float>(i);
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for (int j = 0; j < dims; j++)
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{
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float v = sample[j];
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box[j][0] = std::min(box[j][0], v);
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box[j][1] = std::max(box[j][1], v);
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}
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}
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}
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double best_compactness = DBL_MAX;
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for (int a = 0; a < attempts; a++)
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{
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double compactness = 0;
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for (int iter = 0; ;)
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{
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double max_center_shift = iter == 0 ? DBL_MAX : 0.0;
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swap(centers, old_centers);
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if (iter == 0 && (a > 0 || !(flags & KMEANS_USE_INITIAL_LABELS)))
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{
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if (flags & KMEANS_PP_CENTERS)
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generateCentersPP(data, centers, K, rng, SPP_TRIALS);
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else
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{
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for (int k = 0; k < K; k++)
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generateRandomCenter(dims, box.data(), centers.ptr<float>(k), rng);
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}
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}
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else
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{
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// compute centers
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centers = Scalar(0);
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for (int k = 0; k < K; k++)
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counters[k] = 0;
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for (int i = 0; i < N; i++)
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{
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const float* sample = data.ptr<float>(i);
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int k = labels[i];
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float* center = centers.ptr<float>(k);
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for (int j = 0; j < dims; j++)
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center[j] += sample[j];
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counters[k]++;
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}
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for (int k = 0; k < K; k++)
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{
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if (counters[k] != 0)
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continue;
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// if some cluster appeared to be empty then:
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// 1. find the biggest cluster
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// 2. find the farthest from the center point in the biggest cluster
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// 3. exclude the farthest point from the biggest cluster and form a new 1-point cluster.
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int max_k = 0;
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for (int k1 = 1; k1 < K; k1++)
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{
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if (counters[max_k] < counters[k1])
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max_k = k1;
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}
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double max_dist = 0;
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int farthest_i = -1;
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float* base_center = centers.ptr<float>(max_k);
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float* _base_center = temp.ptr<float>(); // normalized
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float scale = 1.f/counters[max_k];
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for (int j = 0; j < dims; j++)
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_base_center[j] = base_center[j]*scale;
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for (int i = 0; i < N; i++)
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{
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if (labels[i] != max_k)
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continue;
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const float* sample = data.ptr<float>(i);
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double dist = hal::normL2Sqr_(sample, _base_center, dims);
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if (max_dist <= dist)
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{
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max_dist = dist;
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farthest_i = i;
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}
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}
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counters[max_k]--;
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counters[k]++;
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labels[farthest_i] = k;
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const float* sample = data.ptr<float>(farthest_i);
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float* cur_center = centers.ptr<float>(k);
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for (int j = 0; j < dims; j++)
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{
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base_center[j] -= sample[j];
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cur_center[j] += sample[j];
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}
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}
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for (int k = 0; k < K; k++)
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{
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float* center = centers.ptr<float>(k);
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CV_Assert( counters[k] != 0 );
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float scale = 1.f/counters[k];
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for (int j = 0; j < dims; j++)
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center[j] *= scale;
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if (iter > 0)
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{
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double dist = 0;
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const float* old_center = old_centers.ptr<float>(k);
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for (int j = 0; j < dims; j++)
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{
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double t = center[j] - old_center[j];
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dist += t*t;
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}
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max_center_shift = std::max(max_center_shift, dist);
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}
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}
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}
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bool isLastIter = (++iter == MAX(criteria.maxCount, 2) || max_center_shift <= criteria.epsilon);
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if (isLastIter)
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{
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// don't re-assign labels to avoid creation of empty clusters
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parallel_for_(Range(0, N), KMeansDistanceComputer<true>(dists.data(), labels, data, centers), (double)divUp((size_t)(dims * N), CV_KMEANS_PARALLEL_GRANULARITY));
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compactness = sum(Mat(Size(N, 1), CV_64F, &dists[0]))[0];
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break;
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}
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else
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{
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// assign labels
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parallel_for_(Range(0, N), KMeansDistanceComputer<false>(dists.data(), labels, data, centers), (double)divUp((size_t)(dims * N * K), CV_KMEANS_PARALLEL_GRANULARITY));
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}
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}
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if (compactness < best_compactness)
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{
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best_compactness = compactness;
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if (_centers.needed())
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{
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if (_centers.fixedType() && _centers.channels() == dims)
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centers.reshape(dims).copyTo(_centers);
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else
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centers.copyTo(_centers);
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}
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_labels.copyTo(best_labels);
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}
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}
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return best_compactness;
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}
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