[netcdf-c] Fix dependency libmath (#12434)

* [netcdf-c] Add dependency embree3

* [netcdf-c] remove dependency embree3, change the search sequence

* [netcdf-cxx4] Re-fix dependency hdf5

* Update ports/netcdf-c/CONTROL

* [netcdf-c] Remove dependency embree

ports/netcdf-c/CONTROL

@@ -1,6 +1,6 @@
 Source: netcdf-c
 Version: 4.7.3
-Port-Version: 3
+Port-Version: 4
-Build-Depends: hdf5, curl, embree3(linux|osx)
+Build-Depends: hdf5, curl
 Homepage: https://github.com/Unidata/netcdf-c
 Description: a set of self-describing, machine-independent data formats that support the creation, access, and sharing of array-oriented scientific data.

ports/netcdf-c/fix-dependency-libmath.patch

@@ -0,0 +1,13 @@
+diff --git a/CMakeLists.txt b/CMakeLists.txt
+index 35c694f..e2c03e5 100644
+--- a/CMakeLists.txt
++++ b/CMakeLists.txt
+@@ -839,7 +839,7 @@ ENDIF()
+ 
+ # Check for the math library so it can be explicitly linked.
+ IF(NOT WIN32)
+-  FIND_LIBRARY(HAVE_LIBM NAMES math m libm)
++  FIND_LIBRARY(HAVE_LIBM NAMES m libm math)
+   MESSAGE(STATUS "Found Math library: ${HAVE_LIBM}")
+   IF(NOT HAVE_LIBM)
+     MESSAGE(FATAL_ERROR "Unable to find the math library.")

ports/netcdf-c/portfile.cmake

@@ -9,6 +9,7 @@ vcpkg_from_github(
         config-pkg-location.patch
         use_targets.patch
         mpi.patch
+        fix-dependency-libmath.patch
 )
 
 #Remove outdated find modules

ports/netcdf-c/usage

@@ -1,4 +1,4 @@
 The package netcdf-c provides CMake targets:
 
     find_package(netCDF CONFIG REQUIRED)
-    target_link_libraries(main PRIVATE netcdf)
+    target_link_libraries(main PRIVATE netcdf)

ports/netcdf-cxx4/CONTROL

@@ -1,5 +1,6 @@
 Source: netcdf-cxx4
 Version: 4.3.1
+Port-Version: 1
 Build-Depends: hdf5, netcdf-c
 Homepage: https://github.com/Unidata/netcdf-cxx4
 Description: a set of machine-independent data formats that support the creation, access, and sharing of array-oriented scientific data.

ports/netcdf-cxx4/fix-dependecy-hdf5.patch

@@ -1,9 +1,24 @@
 diff --git a/CMakeLists.txt b/CMakeLists.txt
-index 60c699d..6bd7822 100644
+index 60c699d..f06fcc0 100644
 --- a/CMakeLists.txt
 +++ b/CMakeLists.txt
-@@ -402,7 +402,7 @@ ELSE(MSVC)
+@@ -395,14 +395,20 @@ ENDIF(NC_HAS_DEF_VAR_FILTER)
-   FIND_PACKAGE(HDF5 COMPONENTS C HL REQUIRED)
+ ###
+ # Find HDF5
+ ###
+-IF(MSVC)
++IF(0)
+   SET(SEARCH_PACKAGE_NAME ${HDF5_PACKAGE_NAME})
+   FIND_PACKAGE(HDF5 NAMES ${SEARCH_PACKAGE_NAME} COMPONENTS C HL NO_MODULES REQUIRED ${NC_HDF5_LINK_TYPE})
+ ELSE(MSVC)
+-  FIND_PACKAGE(HDF5 COMPONENTS C HL REQUIRED)
++  FIND_PACKAGE(hdf5 CONFIG REQUIRED)
++  set(HDF5_FOUND ${hdf5_FOUND})
++  if (NOT HDF5_USE_STATIC_LIBRARIES)
++    set(HDF5_C_LIBRARY_hdf5 hdf5::hdf5-shared hdf5::hdf5_hl-shared)
++  else()
++    set(HDF5_C_LIBRARY_hdf5 hdf5::hdf5-static hdf5::hdf5_hl-static)
++  endif()
  ENDIF(MSVC)
  
 -CHECK_LIBRARY_EXISTS(${HDF5_C_LIBRARY_hdf5} H5free_memory "" HAVE_H5FREE_MEMORY)
@@ -11,22 +26,16 @@ index 60c699d..6bd7822 100644
  IF(NOT HAVE_H5FREE_MEMORY)
    MESSAGE(STATUS "Plugin support requires libhdf5 with H5Free support. Your libhdf5 install does not provide H5Free.  Please install a newer version of libhdf5 if you require plugin compression support.")
    SET(NC_HAS_DEF_VAR_FILTER "")
-diff --git a/CMakeLists.txt b/CMakeLists.txt
+diff --git a/plugins/CMakeLists.txt b/plugins/CMakeLists.txt
-index 6a48709..79de128 100644
+index 30a4a96..1809d29 100644
---- a/CMakeLists.txt
+--- a/plugins/CMakeLists.txt
-+++ b/CMakeLists.txt
++++ b/plugins/CMakeLists.txt
-@@ -399,7 +399,13 @@ IF(MSVC)
+@@ -23,7 +23,7 @@ SET_TARGET_PROPERTIES(test_bzip2 PROPERTIES OUTPUT_NAME "bzip2")
-   SET(SEARCH_PACKAGE_NAME ${HDF5_PACKAGE_NAME})
+ SET_TARGET_PROPERTIES(test_bzip2 PROPERTIES LIBRARY_OUTPUT_NAME "h5bzip2")
-   FIND_PACKAGE(HDF5 NAMES ${SEARCH_PACKAGE_NAME} COMPONENTS C HL NO_MODULES REQUIRED ${NC_HDF5_LINK_TYPE})
+ SET_TARGET_PROPERTIES(test_bzip2 PROPERTIES ARCHIVE_OUTPUT_NAME "h5bzip2")
- ELSE(MSVC)
+ SET_TARGET_PROPERTIES(test_bzip2 PROPERTIES RUNTIME_OUTPUT_NAME "h5bzip2")
--  FIND_PACKAGE(HDF5 COMPONENTS C HL REQUIRED)
+-TARGET_LINK_LIBRARIES(test_bzip2 ${ALL_TLL_LIBS})
-+  FIND_PACKAGE(hdf5 CONFIG REQUIRED)
++TARGET_LINK_LIBRARIES(test_bzip2 ${ALL_TLL_LIBS} ${HDF5_C_LIBRARY_hdf5})
-+  set(HDF5_FOUND ${hdf5_FOUND})
-+  if (BUILD_SHARED_LIBS)
-+    set(HDF5_C_LIBRARY_hdf5 hdf5::hdf5-shared hdf5::hdf5_hl-shared)
-+  else()
-+    set(HDF5_C_LIBRARY_hdf5 hdf5::hdf5-static hdf5::hdf5_hl-static)
-+  endif()
- ENDIF(MSVC)
  
- set(HAVE_H5FREE_MEMORY ON)
+ ADD_LIBRARY(misc MODULE ${libmisc_SOURCES})
+ SET_TARGET_PROPERTIES(misc PROPERTIES LIBRARY_OUTPUT_NAME "misc")

ports/netcdf-cxx4/portfile.cmake

@@ -1,6 +1,6 @@
-vcpkg_check_linkage(ONLY_STATIC_LIBRARY)
+string(COMPARE EQUAL "${VCPKG_LIBRARY_LINKAGE}" "static" HDF5_USE_STATIC_LIBRARIES)
 
-set(HDF5_USE_STATIC_LIBRARIES ON)
+vcpkg_check_linkage(ONLY_STATIC_LIBRARY)
 
 vcpkg_from_github(
     OUT_SOURCE_PATH SOURCE_PATH