[salome-medcoupling] Add new port (#32916)

* [salome-configuration|medcoupling] new ports

* format manifest

* v db

* remove trace

* v db

* fix dep

* v db

* Apply suggestions from code review

Co-authored-by: jim wang <122244446+jimwang118@users.noreply.github.com>

* v db

* adjust SALOME_WITH_MPI depending on HDF5

* remove nuking of CMAKE_PREFIX_PATH from salome

* v db

* fix post build

* v db

* Fix med-fichier config on linux

* add supports

* format manifest

* v db

* don't want to investigate linux failure further

---------

Co-authored-by: jim wang <122244446+jimwang118@users.noreply.github.com>

ports/salome-configuration/portfile.cmake

@@ -0,0 +1,20 @@
+vcpkg_from_git(
+    OUT_SOURCE_PATH SOURCE_PATH_CONFIG
+    URL "https://git.salome-platform.org/gitpub/tools/configuration.git"
+    REF "25f724f7a6c0000330a40c3851dcd8bc2493e1fa"
+)
+
+file(COPY "${SOURCE_PATH_CONFIG}/" DESTINATION "${CURRENT_PACKAGES_DIR}/share/${PORT}")
+
+vcpkg_install_copyright(FILE_LIST "${SOURCE_PATH_CONFIG}/copyright/CEA_EDF.txt")
+
+file(WRITE "${CURRENT_PACKAGES_DIR}/share/${PORT}/vcpkg-port-config.cmake" [[set(SALOME_CONFIGURATION_ROOT_DIR "${CMAKE_CURRENT_LIST_DIR}")]])
+
+set(VCPKG_POLICY_EMPTY_PACKAGE enabled)
+
+file(READ "${CURRENT_PACKAGES_DIR}/share/${PORT}/cmake/SalomeMacros.cmake" contents)
+if(HDF5_WITH_PARALLEL)
+    string(PREPEND contents "set(SALOME_USE_MPI ON)\n")
+endif()
+string(REPLACE [[SET(CMAKE_PREFIX_PATH "${${_envvar}}")]] "" contents "${contents}")
+file(WRITE "${CURRENT_PACKAGES_DIR}/share/${PORT}/cmake/SalomeMacros.cmake" "${contents}")

ports/salome-configuration/vcpkg.json

@@ -0,0 +1,15 @@
+{
+  "name": "salome-configuration",
+  "version": "9.10.0",
+  "description": "Configuration files and other utilities for SALOME platform",
+  "homepage": "https://www.salome-platform.org",
+  "license": "LGPL-2.1-or-later",
+  "supports": "windows | linux",
+  "dependencies": [
+    {
+      "$comment": "This is a dummy dependency to inject SALOME_USE_MPI depending on HDF5_WITH_PARALLEL",
+      "name": "hdf5",
+      "default-features": false
+    }
+  ]
+}

ports/salome-med-fichier/portfile.cmake

@@ -37,7 +37,7 @@ if(VCPKG_TARGET_IS_WINDOWS)
   vcpkg_replace_string("${CURRENT_PACKAGES_DIR}/share/MEDFile/MEDFileConfig.cmake" "/cmake/" "/share/MEDFile/")
 else()
   vcpkg_cmake_config_fixup(PACKAGE_NAME MEDFile CONFIG_PATH share/cmake/medfile-4.1.1)
-  vcpkg_replace_string("${CURRENT_PACKAGES_DIR}/share/MEDFile/MEDFileConfig.cmake" "/cmake/medfile-4.1.1" "/share/MEDFile/")
+  vcpkg_replace_string("${CURRENT_PACKAGES_DIR}/share/MEDFile/MEDFileConfig.cmake" "share/cmake/medfile-${VERSION}" "share/MEDFile")
 endif()
 
 if(VCPKG_LIBRARY_LINKAGE STREQUAL "dynamic")

ports/salome-med-fichier/vcpkg.json

@@ -1,6 +1,7 @@
 {
   "name": "salome-med-fichier",
   "version": "4.1.1",
+  "port-version": 1,
   "description": "med-fichier provides a low level C API for fine-grained access to the structure of MED files (.med)",
   "homepage": "https://www.salome-platform.org",
   "license": "LGPL-3.0-or-later",

ports/salome-medcoupling/fix-missing-symbols.patch

@@ -0,0 +1,13 @@
+diff --git a/src/MEDCoupling/MEDCouplingMemArray.cxx b/src/MEDCoupling/MEDCouplingMemArray.cxx
+index 60d040806..8cb6748d2 100644
+--- a/src/MEDCoupling/MEDCouplingMemArray.cxx
++++ b/src/MEDCoupling/MEDCouplingMemArray.cxx
+@@ -44,6 +44,8 @@ using namespace MEDCoupling;
+ 
+ template class MEDCOUPLING_EXPORT MEDCoupling::MemArray<mcIdType>;
+ template class MEDCOUPLING_EXPORT MEDCoupling::MemArray<double>;
++template class MEDCOUPLING_EXPORT MEDCoupling::MemArray<Int32>;
++template class MEDCOUPLING_EXPORT MEDCoupling::MemArray<Int64>;
+ template class MEDCOUPLING_EXPORT MEDCoupling::DataArrayTemplate<mcIdType>;
+ template class MEDCOUPLING_EXPORT MEDCoupling::DataArrayTemplate<double>;
+ template class MEDCOUPLING_EXPORT MEDCoupling::DataArrayTemplateClassic<Int32>;

ports/salome-medcoupling/portfile.cmake

@@ -0,0 +1,71 @@
+if(VCPKG_TARGET_IS_WINDOWS)
+    vcpkg_check_linkage(ONLY_DYNAMIC_LIBRARY)
+    # Fixing static builds requires fixing/removing _declspec(dllexport|dllimport)
+    # in the EXPORTS macros.
+endif()
+
+vcpkg_from_git(
+    OUT_SOURCE_PATH SOURCE_PATH
+    URL "https://git.salome-platform.org/gitpub/tools/medcoupling.git"
+    REF "fe2e38d301902c626f644907e00e499552bb2fa5"
+    PATCHES 
+        win.patch 
+        fix-missing-symbols.patch
+)
+
+string(COMPARE EQUAL "${VCPKG_LIBRARY_LINKAGE}" "static"  MEDCOUPLING_BUILD_STATIC)
+
+vcpkg_cmake_configure(
+    SOURCE_PATH "${SOURCE_PATH}"
+    OPTIONS 
+      "-DCONFIGURATION_ROOT_DIR=${SALOME_CONFIGURATION_ROOT_DIR}"
+      -DMEDCOUPLING_BUILD_TESTS=OFF
+      -DMEDCOUPLING_BUILD_PY_TESTS=OFF
+      -DMEDCOUPLING_BUILD_DOC=OFF
+      -DMEDCOUPLING_BUILD_STATIC=${MEDCOUPLING_BUILD_STATIC}
+      -DMEDCOUPLING_ENABLE_PYTHON=OFF
+      -DMEDCOUPLING_ENABLE_RENUMBER=OFF
+      -DMEDCOUPLING_METIS_V5=ON
+      -DMETIS_LIBRARIES=metis # this is a target
+      -DSCOTCH_LIBRARIES=SCOTCH::scotch
+)
+
+vcpkg_cmake_install()
+
+file(GLOB dll_files "${CURRENT_PACKAGES_DIR}/lib/*.dll")
+file(MAKE_DIRECTORY "${CURRENT_PACKAGES_DIR}/bin")
+foreach(dll_file IN LISTS dll_files)
+  string(REPLACE "/lib/" "/bin/" new_loc "${dll_file}")
+  file(RENAME "${dll_file}" "${new_loc}")
+endforeach()
+
+if(NOT VCPKG_BUILD_TYPE)
+  file(GLOB dll_files "${CURRENT_PACKAGES_DIR}/debug/lib/*.dll")
+  file(MAKE_DIRECTORY "${CURRENT_PACKAGES_DIR}/debug/bin")
+  foreach(dll_file IN LISTS dll_files)
+    string(REPLACE "/lib/" "/bin/" new_loc "${dll_file}")
+    file(RENAME "${dll_file}" "${new_loc}")
+  endforeach()
+endif()
+
+vcpkg_cmake_config_fixup(PACKAGE_NAME MEDCoupling CONFIG_PATH "cmake_files")
+if(VCPKG_TARGET_IS_WINDOWS)
+  set(file "${CURRENT_PACKAGES_DIR}/share/MEDCoupling/MEDCouplingTargets-release.cmake")
+  file(READ "${file}" contents)
+  string(REGEX REPLACE "/lib/([^.]+)\\.dll" "/bin/\\1.dll" contents "${contents}")
+  file(WRITE "${file}" "${contents}")
+
+  if(NOT VCPKG_BUILD_TYPE)
+    set(file "${CURRENT_PACKAGES_DIR}/share/MEDCoupling/MEDCouplingTargets-debug.cmake")
+    file(READ "${file}" contents)
+    string(REGEX REPLACE "/lib/([^.]+)\\.dll" "/bin/\\1.dll" contents "${contents}")
+    file(WRITE "${file}" "${contents}")
+  endif()
+endif()
+
+vcpkg_replace_string("${CURRENT_PACKAGES_DIR}/share/MEDCoupling/MEDCouplingConfig.cmake" "/cmake_files" "/share/MEDCoupling")
+vcpkg_copy_tools(TOOL_NAMES medpartitioner AUTO_CLEAN)
+vcpkg_install_copyright(FILE_LIST "${SOURCE_PATH}/COPYING")
+
+file(REMOVE_RECURSE "${CURRENT_PACKAGES_DIR}/debug/include"
+                    "${CURRENT_PACKAGES_DIR}/debug/share")

ports/salome-medcoupling/vcpkg.json

@@ -0,0 +1,30 @@
+{
+  "name": "salome-medcoupling",
+  "version": "9.10.0",
+  "description": "salome-medcoupling is a part of SALOME platform to manipulate meshes and fields in memory, and use salome-med format for files.",
+  "homepage": "https://www.salome-platform.org",
+  "license": "GPL-2.0-or-later",
+  "supports": "!(windows & static)",
+  "dependencies": [
+    "boost-chrono",
+    "boost-date-time",
+    "boost-filesystem",
+    "boost-regex",
+    "boost-serialization",
+    "boost-system",
+    "boost-thread",
+    "libxml2",
+    "metis",
+    "salome-configuration",
+    "salome-med-fichier",
+    "scotch",
+    {
+      "name": "vcpkg-cmake",
+      "host": true
+    },
+    {
+      "name": "vcpkg-cmake-config",
+      "host": true
+    }
+  ]
+}

ports/salome-medcoupling/win.patch

@@ -0,0 +1,18 @@
+diff --git a/src/MEDPartitioner/CMakeLists.txt b/src/MEDPartitioner/CMakeLists.txt
+index e088a0ed4..048505267 100644
+--- a/src/MEDPartitioner/CMakeLists.txt
++++ b/src/MEDPartitioner/CMakeLists.txt
+@@ -114,8 +114,12 @@ SET(medpartitionercpp_LDFLAGS
+   interpkernel
+   medcouplingcpp
+   medloader
+-  -lpthread
+ )
++
++if(NOT WIN32)
++    list(APPEND medpartitionercpp_LDFLAGS -lpthread)
++endif()
++
+ IF(MEDCOUPLING_PARTITIONER_PARMETIS)
+   SET(medpartitionercpp_HEADERS_HXX ${medpartitionercpp_HEADERS_HXX} MEDPARTITIONER_ParMetisGraph.hxx)
+   SET(medpartitionercpp_SOURCES ${medpartitionercpp_SOURCES} MEDPARTITIONER_ParMetisGraph.cxx MEDPARTITIONER_MetisGraph.cxx)

scripts/ci.baseline.txt

@@ -1150,6 +1150,7 @@ rtlsdr:x64-uwp=fail
 rttr:arm-neon-android=fail
 rttr:arm64-android=fail
 rttr:x64-android=fail
+salome-medcoupling:x64-linux=fail
 scintilla:arm-neon-android=fail
 scintilla:arm64-android=fail
 scintilla:x64-android=fail

versions/baseline.json

@@ -7352,8 +7352,16 @@
       "baseline": "2018-09-21",
       "port-version": 3
     },
+    "salome-configuration": {
+      "baseline": "9.10.0",
+      "port-version": 0
+    },
     "salome-med-fichier": {
       "baseline": "4.1.1",
+      "port-version": 1
+    },
+    "salome-medcoupling": {
+      "baseline": "9.10.0",
       "port-version": 0
     },
     "sassc": {

versions/s-/salome-configuration.json

@@ -0,0 +1,9 @@
+{
+  "versions": [
+    {
+      "git-tree": "2cbf34b9ab5a63d3b341c3a8c3e1b0cf48c1c6d9",
+      "version": "9.10.0",
+      "port-version": 0
+    }
+  ]
+}

versions/s-/salome-med-fichier.json

@@ -1,5 +1,10 @@
 {
   "versions": [
+    {
+      "git-tree": "26a3c208d3498e3c40c3f423f2493d1df53d49db",
+      "version": "4.1.1",
+      "port-version": 1
+    },
     {
       "git-tree": "20cd7a3c38b2cef44fa45511e39c82488bb3aa0b",
       "version": "4.1.1",

versions/s-/salome-medcoupling.json

@@ -0,0 +1,9 @@
+{
+  "versions": [
+    {
+      "git-tree": "5b007fe28cfb58ed83464e901ce70e8a1ef4bfa5",
+      "version": "9.10.0",
+      "port-version": 0
+    }
+  ]
+}