[libsbml] Update to 5.20.0 (#31149)

* [libsbml] Update to 5.20.0

* update version

* fix incorrect option

* update version

* install usage

* update version

* apply suggestions

* update version

* fix depends libxml2

* update version

ports/libsbml/fix-deps-libxml.patch

@@ -0,0 +1,38 @@
+diff --git a/CMakeLists.txt b/CMakeLists.txt
+index 42b3bd6..34e9a4c 100644
+--- a/CMakeLists.txt
++++ b/CMakeLists.txt
+@@ -442,17 +442,15 @@ endif(WITH_EXPAT)
+ set(USE_LIBXML OFF)
+ if(WITH_LIBXML)
+ 
+-  find_package(LIBXML REQUIRED)
++  find_package(LibXml2 REQUIRED)
+   
+   add_definitions( -DUSE_LIBXML )
+   list(APPEND SWIG_EXTRA_ARGS -DUSE_LIBXML)
+   set(USE_LIBXML ON)
+ 
+-  set(LIBSBML_XML_LIBRARY "libxml2")
+-  set(LIBSBML_XML_LIBRARY_INCLUDE ${LIBXML_INCLUDE_DIR})
+-  set(LIBSBML_XML_LIBRARY_LIBS ${LIBXML_LIBRARY})
++  set(LIBSBML_XML_LIBRARY "LibXml2::LibXml2")
++  set(LIBSBML_XML_LIBRARY_LIBS ${LIBSBML_XML_LIBRARY})
+ 
+-  list(APPEND LIBSBML_FIND_MODULES "${CMAKE_CURRENT_SOURCE_DIR}/CMakeModules/FindLIBXML.cmake")
+ 
+ endif(WITH_LIBXML)
+ 
+diff --git a/src/CMakeLists.txt b/src/CMakeLists.txt
+index 79301a6..985f6cb 100644
+--- a/src/CMakeLists.txt
++++ b/src/CMakeLists.txt
+@@ -423,7 +423,7 @@ if(WITH_LIBXML)
+         sbml/xml/LibXMLParser.h
+         sbml/xml/LibXMLTranscode.h
+     )
+-    set(LIBSBML_LIBS ${LIBSBML_LIBS} LIBXML::LIBXML)
++    set(LIBSBML_LIBS ${LIBSBML_LIBS} LibXml2::LibXml2)
+ 
+ endif(WITH_LIBXML)
+ 

ports/libsbml/libsbml-config.cmake

@@ -0,0 +1,6 @@
+include(CMakeFindDependencyMacro)
+find_dependency(libsbml-static CONFIG)
+if(NOT TARGET libsbml)
+    add_library(libsbml INTERFACE IMPORTED)
+    target_link_libraries(libsbml INTERFACE libsbml-static)
+endif()

ports/libsbml/portfile.cmake

@@ -1,13 +1,16 @@
 vcpkg_from_github(
     OUT_SOURCE_PATH SOURCE_PATH
     REPO sbmlteam/libsbml
-    REF 118ffbf11f1a5245cc544c1eac71019d979ecb20 #libSBML-5.19.0
-    SHA512 7fe8b4d594876c6408e01c646187cb1587d0b4e12707a43286150d4e4646841e547bde971de917de1cdfbbb9365172aeac43c8e02f7d354400f9166f0f1c2c3d
+    REF "v${VERSION}"
+    SHA512 c40f164ebd05a36f140ce2684dedb4bbccc51a2732383d3935fca1258738a9b9ba5bc1be2061f3b113b213e5cbb7fe22e9dca43ff78d91964c79cad093e55466
     HEAD_REF development
+    PATCHES
+        fix-deps-libxml.patch
 )
 
 string(COMPARE EQUAL "${VCPKG_CRT_LINKAGE}" "static" STATIC_RUNTIME)
 string(COMPARE EQUAL "${VCPKG_LIBRARY_LINKAGE}" "static" STATIC_LIBRARY)
+string(COMPARE EQUAL "${VCPKG_LIBRARY_LINKAGE}" "dynamic" DYNAMIC_LIBRARY)
 
 vcpkg_check_features(OUT_FEATURE_OPTIONS FEATURE_OPTIONS
     FEATURES
@@ -53,11 +56,17 @@ vcpkg_cmake_configure(
         -DENABLE_L3V2EXTENDEDMATH:BOOL=ON
         -DWITH_STATIC_RUNTIME=${STATIC_RUNTIME}
         -DLIBSBML_SKIP_SHARED_LIBRARY=${STATIC_LIBRARY}
+        -DLIBSBML_SKIP_STATIC_LIBRARY=${DYNAMIC_LIBRARY}
 )
 
 vcpkg_cmake_install()
 
-vcpkg_cmake_config_fixup(CONFIG_PATH lib/cmake)
+if(VCPKG_LIBRARY_LINKAGE STREQUAL dynamic)
+    vcpkg_cmake_config_fixup(CONFIG_PATH lib/cmake)
+else()
+    vcpkg_cmake_config_fixup(PACKAGE_NAME libsbml-static CONFIG_PATH lib/cmake)
+    file(INSTALL "${CMAKE_CURRENT_LIST_DIR}/libsbml-config.cmake" DESTINATION "${CURRENT_PACKAGES_DIR}/share/${PORT}")
+endif()
 
 vcpkg_copy_pdbs()
 
@@ -84,5 +93,6 @@ if(EXISTS "${CURRENT_PACKAGES_DIR}/README.md")
     file(REMOVE_RECURSE "${CURRENT_PACKAGES_DIR}/README.md")
 endif()
 
-file(INSTALL "${SOURCE_PATH}/LICENSE.txt" DESTINATION "${CURRENT_PACKAGES_DIR}/share/${PORT}" RENAME copyright)
+file(INSTALL "${CMAKE_CURRENT_LIST_DIR}/usage" DESTINATION "${CURRENT_PACKAGES_DIR}/share/${PORT}")
+vcpkg_install_copyright(FILE_LIST "${SOURCE_PATH}/LICENSE.txt")
 vcpkg_fixup_pkgconfig()

ports/libsbml/usage

@@ -0,0 +1,4 @@
+libsbml provides CMake targets:
+
+    find_package(libsbml CONFIG REQUIRED)
+    target_link_libraries(main PRIVATE libsbml)

ports/libsbml/vcpkg.json

@@ -1,8 +1,9 @@
 {
   "name": "libsbml",
-  "version": "5.19.0",
-  "port-version": 2,
+  "version": "5.20.0",
   "description": "A library for reading / writing SBML files",
+  "homepage": "https://github.com/sbmlteam/libsbml",
+  "license": "LGPL-2.1",
   "supports": "!uwp",
   "dependencies": [
     {
@@ -16,7 +17,6 @@
   ],
   "default-features": [
     "comp",
-    "expat",
     "fbc",
     "groups",
     "layout",

versions/baseline.json

@@ -4461,8 +4461,8 @@
       "port-version": 1
     },
     "libsbml": {
-      "baseline": "5.19.0",
-      "port-version": 2
+      "baseline": "5.20.0",
+      "port-version": 0
     },
     "libsbsms": {
       "baseline": "2.3.0",

versions/l-/libsbml.json

@@ -1,5 +1,10 @@
 {
   "versions": [
+    {
+      "git-tree": "6b592087185a6576e30cc29e129bec77d12c4aeb",
+      "version": "5.20.0",
+      "port-version": 0
+    },
     {
       "git-tree": "9793402aaa4679187a9a703f189239544e3daf77",
       "version": "5.19.0",