[vtk] Fix flakiness by relying on vcpkg-provided dependencies

[libharu] Add patches required for vtk
[vcpkg-build-cmake] Add retry logic for mt.exe failures

ports/libharu/CONTROL

@@ -1,4 +1,4 @@
 Source: libharu
-Version: 2017-08-15-d84867ebf9f-5
+Version: 2017-08-15-d84867ebf9f-6
 Description: libharu - free PDF library
 Build-Depends: zlib, libpng

ports/libharu/add-boolean-typedef.patch

@@ -0,0 +1,12 @@
+diff --git a/include/hpdf.h b/include/hpdf.h
+index 1cf0dd9..cce9b59 100644
+--- a/include/hpdf.h
++++ b/include/hpdf.h
+@@ -54,6 +54,7 @@
+ #include "hpdf_types.h"
+ 
+ typedef void         *HPDF_HANDLE;
++typedef HPDF_HANDLE   HPDF_Boolean;
+ typedef HPDF_HANDLE   HPDF_Doc;
+ typedef HPDF_HANDLE   HPDF_Page;
+ typedef HPDF_HANDLE   HPDF_Pages;

ports/libharu/portfile.cmake

@@ -1,11 +1,22 @@
 include(vcpkg_common_functions)
+
+vcpkg_download_distfile(SHADING_PR
+    URLS "https://github.com/libharu/libharu/pull/157.diff"
+    FILENAME "libharu-shading-pr-157.patch"
+    SHA512 f2ddb22b54b4eccc79400b6a4b2d245a221898f75456a5a559523eab7a523a87dfc5dfd0ec5fb17a771697e03c7ea6ed4c6095eff73e0a4302cd6eb24584c957
+)
+
 vcpkg_from_github(
     OUT_SOURCE_PATH SOURCE_PATH
     REPO libharu/libharu
     REF d84867ebf9f3de6afd661d2cdaff102457fbc371
     SHA512 789579dd52c1056ae90a4ce5360c26ba92cadae5341a3901c4159afe624129a1f628fa6412952a398e048b0e5040c93f7ed5b4e4bc620a22d897098298fe2a99
     HEAD_REF master
-    PATCHES fix-build-fail.patch
+    PATCHES
+        fix-build-fail.patch
+        add-boolean-typedef.patch
+        # This patch adds shading support which is required for VTK. If desired, this could be moved into an on-by-default feature.
+        ${SHADING_PR}
 )
 
 string(COMPARE EQUAL "${VCPKG_LIBRARY_LINKAGE}" "static" LIBHPDF_STATIC)
@@ -21,7 +32,7 @@ vcpkg_configure_cmake(
 
 vcpkg_install_cmake()
 
-if(VCPKG_LIBRARY_LINKAGE STREQUAL static)
+if(VCPKG_LIBRARY_LINKAGE STREQUAL "static")
        file(RENAME ${CURRENT_PACKAGES_DIR}/lib/libhpdfs.lib ${CURRENT_PACKAGES_DIR}/lib/libhpdf.lib)
        file(RENAME ${CURRENT_PACKAGES_DIR}/debug/lib/libhpdfsd.lib ${CURRENT_PACKAGES_DIR}/debug/lib/libhpdfd.lib)
 endif()

ports/vtk/CONTROL

@@ -1,7 +1,7 @@
 Source: vtk
 Version: 8.2.0-2
 Description: Software system for 3D computer graphics, image processing, and visualization
-Build-Depends: zlib, libpng, tiff, libxml2, jsoncpp, glew, freetype, expat, hdf5, libjpeg-turbo, proj4, lz4, libtheora, atlmfc (windows)
+Build-Depends: zlib, libpng, tiff, libxml2, jsoncpp, glew, freetype, expat, hdf5, libjpeg-turbo, proj4, lz4, libtheora, atlmfc (windows), eigen3, double-conversion, pugixml, libharu, sqlite3
 
 Feature: openvr
 Description: OpenVR functionality for VTK
@@ -9,7 +9,7 @@ Build-Depends: sdl2, openvr
 
 Feature: qt
 Description: Qt functionality for VTK
-Build-Depends: qt5
+Build-Depends: qt5, netcdf-c
 
 Feature: mpi
 Description: MPI functionality for VTK
@@ -18,7 +18,3 @@ Build-Depends: msmpi, hdf5[parallel]
 Feature: python
 Description: Python functionality for VTK
 Build-Depends: python3
-
-Feature: libharu
-Description: PDF libharu functionality for VTK
-Build-Depends: libharu

ports/vtk/fix-pugixml-link.patch

@@ -0,0 +1,14 @@
+diff --git a/IO/CityGML/CMakeLists.txt b/IO/CityGML/CMakeLists.txt
+index ce979ba..322e2de 100644
+--- a/IO/CityGML/CMakeLists.txt
++++ b/IO/CityGML/CMakeLists.txt
+@@ -4,8 +4,5 @@ vtk_module_library(vtkIOCityGML ${Module_SRCS})
+ # pugixml does not set _INCLUDE_DIRS or _LIBRARIES
+ if(VTK_USE_SYSTEM_PUGIXML AND NOT pugixml_INCLUDE_DIRS)
+   find_package(pugixml REQUIRED)
+-  get_target_property(pugixml_INCLUDE_DIRS pugixml INTERFACE_INCLUDE_DIRECTORIES)
+-  get_target_property(pugixml_LIBRARIES pugixml LOCATION)
+-  include_directories(${pugixml_INCLUDE_DIRS})
+-  vtk_module_link_libraries(vtkIOCityGML LINK_PRIVATE ${pugixml_LIBRARIES})
++  vtk_module_link_libraries(vtkIOCityGML LINK_PRIVATE pugixml)
+ endif()

ports/vtk/portfile.cmake

@@ -16,9 +16,9 @@ else()
 endif()
 
 if ("mpi" IN_LIST FEATURES)
-    set(VTK_WITH_MPI                     ON )
+    set(VTK_Group_MPI ON)
 else()
-    set(VTK_WITH_MPI                     OFF )
+    set(VTK_Group_MPI OFF)
 endif()
 
 if ("python" IN_LIST FEATURES)
@@ -28,15 +28,9 @@ else()
 endif()
 
 if("openvr" IN_LIST FEATURES)
-    set(VTK_WITH_OPENVR                  ON)
+    set(Module_vtkRenderingOpenVR ON)
 else()
-    set(VTK_WITH_OPENVR                  OFF)
+    set(Module_vtkRenderingOpenVR OFF)
-endif()
-
-if("libharu" IN_LIST FEATURES)
-    set(VTK_WITH_LIBHARU                  ON)
-else()
-    set(VTK_WITH_LIBHARU                  OFF)
 endif()
 
 set(VTK_WITH_ALL_MODULES                 OFF) # IMPORTANT: if ON make sure `qt5`, `mpi`, `python3`, `ffmpeg`, `gdal`, `fontconfig`,
@@ -46,14 +40,16 @@ set(VTK_WITH_ALL_MODULES                 OFF) # IMPORTANT: if ON make sure `qt5`
 # Clone & patch
 vcpkg_from_github(
     OUT_SOURCE_PATH SOURCE_PATH
-    REPO "Kitware/VTK"
+    REPO Kitware/VTK
     REF "v${VTK_LONG_VERSION}"
     SHA512 fd1d9c2872baa6eca7f8105b0057b56ec554e9d5eaf25985302e7fc032bdce72255d79e3f5f16ca50504151bda49cb3a148272ba32e0f410b4bdb70959b8f3f4
     HEAD_REF "master"
     PATCHES
         fix-find-lz4.patch
         fix_ogg_linkage.patch
+        fix-pugixml-link.patch
 )
+
 # Remove the FindGLEW.cmake and FindPythonLibs.cmake that are distributed with VTK,
 # since they do not detect the debug libraries correctly.
 # The default files distributed with CMake (>= 3.9) should be superior by all means.
@@ -73,12 +69,6 @@ if(VTK_WITH_QT)
     )
 endif()
 
-if(VTK_WITH_MPI)
-    list(APPEND ADDITIONAL_OPTIONS
-        -DVTK_Group_MPI=ON
-    )
-endif()
-
 if(VTK_WITH_PYTHON)
     list(APPEND ADDITIONAL_OPTIONS
         -DVTK_WRAP_PYTHON=ON
@@ -86,18 +76,6 @@ if(VTK_WITH_PYTHON)
     )
 endif()
 
-if(VTK_WITH_OPENVR)
-    list(APPEND ADDITIONAL_OPTIONS
-        -DModule_vtkRenderingOpenVR=ON
-    )
-endif()
-
-if(VTK_WITH_LIBHARU)
-    list(APPEND ADDITIONAL_OPTIONS
-        -DVTK_USE_SYSTEM_LIBHARU=ON
-    )
-endif()
-
 if(VTK_WITH_ALL_MODULES)
     list(APPEND ADDITIONAL_OPTIONS
         -DVTK_BUILD_ALL_MODULES=ON
@@ -123,44 +101,31 @@ endif()
 
 # =============================================================================
 # Configure & Install
-if(${VCPKG_LIBRARY_LINKAGE} MATCHES "static")
-    set(HDF5_USE_STATIC_LIBRARIES ON)
-endif()
 
 vcpkg_configure_cmake(
     SOURCE_PATH ${SOURCE_PATH}
     PREFER_NINJA
     OPTIONS
-        -DHDF5_USE_STATIC_LIBRARIES=${HDF5_USE_STATIC_LIBRARIES}
-        -DHAVE_SNPRINTF=ON
-        -DVTK_Group_Imaging=ON
-        -DVTK_Group_Views=ON
         -DBUILD_TESTING=OFF
         -DBUILD_EXAMPLES=OFF
-        -DVTK_USE_SYSTEM_EXPAT=ON
-        -DVTK_USE_SYSTEM_FREETYPE=ON
-        # -DVTK_USE_SYSTEM_GL2PS=ON
-        -DVTK_USE_SYSTEM_JPEG=ON
-        -DVTK_USE_SYSTEM_GLEW=ON
-        -DVTK_USE_SYSTEM_HDF5=ON
-        -DVTK_USE_SYSTEM_JSONCPP=ON
-        -DVTK_USE_SYSTEM_LIBPROJ=ON
-        -DVTK_USE_SYSTEM_LIBXML2=ON
-        -DVTK_USE_SYSTEM_LZ4=ON
-        # -DVTK_USE_SYSTEM_NETCDF=ON
-        # -DVTK_USE_SYSTEM_NETCDFCPP=ON
-        -DVTK_USE_SYSTEM_OGG=ON
-        -DVTK_USE_SYSTEM_THEORA=ON
-        -DVTK_USE_SYSTEM_PNG=ON
-        -DVTK_USE_SYSTEM_TIFF=ON
-        -DVTK_USE_SYSTEM_ZLIB=ON
         -DVTK_INSTALL_INCLUDE_DIR=include
         -DVTK_INSTALL_DATA_DIR=share/vtk/data
         -DVTK_INSTALL_DOC_DIR=share/vtk/doc
         -DVTK_INSTALL_PACKAGE_DIR=share/vtk
         -DVTK_INSTALL_RUNTIME_DIR=bin
         -DVTK_FORBID_DOWNLOADS=ON
+
+        # We set all libraries to "system" and explicitly list the ones that should use embedded copies
+        -DVTK_USE_SYSTEM_LIBRARIES=ON
+        -DVTK_USE_SYSTEM_GL2PS=OFF
+
+        # Select modules / groups to install
+        -DVTK_Group_Imaging=ON
+        -DVTK_Group_Views=ON
         -DModule_vtkGUISupportMFC=${Module_vtkGUISupportMFC}
+        -DModule_vtkRenderingOpenVR=${Module_vtkRenderingOpenVR}
+        -DVTK_Group_MPI=${VTK_Group_MPI}
+
         ${ADDITIONAL_OPTIONS}
 )
 
@@ -286,7 +251,7 @@ if(VTK_WITH_ALL_MODULES)
     file(REMOVE ${CURRENT_PACKAGES_DIR}/debug/XdmfConfig.cmake)
 endif()
 
-if(VCPKG_LIBRARY_LINKAGE STREQUAL static)
+if(VCPKG_LIBRARY_LINKAGE STREQUAL "static")
     file(REMOVE_RECURSE ${CURRENT_PACKAGES_DIR}/bin)
     file(REMOVE_RECURSE ${CURRENT_PACKAGES_DIR}/debug/bin)
 endif()

scripts/cmake/vcpkg_build_cmake.cmake

@@ -162,6 +162,33 @@ function(vcpkg_build_cmake)
                             endif()
                         endwhile()
                     endif()
+                elseif(out_contents MATCHES "mt : general error c101008d: ")
+                    # Antivirus workaround - occasionally files are locked and cause mt.exe to fail
+                    set(ITERATION 0)
+                    while (ITERATION LESS 3 AND out_contents MATCHES "mt : general error c101008d: ")
+                        MATH(EXPR ITERATION "${ITERATION}+1")
+                        message(STATUS "Restarting Build ${TARGET_TRIPLET}-${SHORT_BUILDTYPE} because of mt.exe file locking issue. Iteration: ${ITERATION}")
+                        execute_process(
+                            COMMAND ${CMAKE_COMMAND} --build . --config ${CONFIG} ${TARGET_PARAM} -- ${BUILD_ARGS}
+                            OUTPUT_FILE "${LOGPREFIX}-out-${ITERATION}.log"
+                            ERROR_FILE "${LOGPREFIX}-err-${ITERATION}.log"
+                            RESULT_VARIABLE error_code
+                            WORKING_DIRECTORY ${CURRENT_BUILDTREES_DIR}/${TARGET_TRIPLET}-${SHORT_BUILDTYPE})
+
+                        if(error_code)
+                            file(READ "${LOGPREFIX}-out-${ITERATION}.log" out_contents)
+                            file(READ "${LOGPREFIX}-err-${ITERATION}.log" err_contents)
+
+                            if(out_contents)
+                                list(APPEND LOGS "${LOGPREFIX}-out-${ITERATION}.log")
+                            endif()
+                            if(err_contents)
+                                list(APPEND LOGS "${LOGPREFIX}-err-${ITERATION}.log")
+                            endif()
+                        else()
+                            break()
+                        endif()
+                    endwhile()
                 endif()
 
                 if(error_code)
@@ -170,7 +197,7 @@ function(vcpkg_build_cmake)
                         file(TO_NATIVE_PATH "${LOG}" NATIVE_LOG)
                         list(APPEND STRINGIFIED_LOGS "    ${NATIVE_LOG}\n")
                     endforeach()
-                    set(_eb_COMMAND ${CMAKE_COMMAND} --build . --config ${CONFIG} ${TARGET_PARAM} -- ${BUILD_ARGS} ${NO_PARALLEL_ARG})
+                    set(_eb_COMMAND ${CMAKE_COMMAND} --build . --config ${CONFIG} ${TARGET_PARAM} -- ${BUILD_ARGS} ${PARALLEL_ARG})
                     set(_eb_WORKING_DIRECTORY ${CURRENT_BUILDTREES_DIR}/${TARGET_TRIPLET}-${SHORT_BUILDTYPE})
                     message(FATAL_ERROR
                         "  Command failed: ${_eb_COMMAND}\n"