mirror of
https://github.com/microsoft/vcpkg.git
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79 lines
3.8 KiB
Diff
79 lines
3.8 KiB
Diff
diff --git a/Makefile b/Makefile
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index f6e154f..fb4f527 100644
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--- a/Makefile
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+++ b/Makefile
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@@ -137,6 +137,8 @@ HTS_BUILD_AVX2 =
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HTS_BUILD_AVX512 =
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HTS_BUILD_SSE4 =
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+PTHREAD = -pthread
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+
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include htslib_vars.mk
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include htscodecs.mk
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@@ -183,10 +185,10 @@ config_vars.h:
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.SUFFIXES: .bundle .c .cygdll .dll .o .pico .so
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.c.o:
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- $(CC) $(CFLAGS) $(TARGET_CFLAGS) $(ALL_CPPFLAGS) -c -o $@ $<
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+ $(CC) $(CFLAGS) $(TARGET_CFLAGS) $(ALL_CPPFLAGS) $(PTHREAD) -c -o $@ $<
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.c.pico:
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- $(CC) $(CFLAGS) $(TARGET_CFLAGS) $(ALL_CPPFLAGS) $(EXTRA_CFLAGS_PIC) -c -o $@ $<
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+ $(CC) $(CFLAGS) $(TARGET_CFLAGS) $(ALL_CPPFLAGS) $(PTHREAD) $(EXTRA_CFLAGS_PIC) -c -o $@ $<
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LIBHTS_OBJS = \
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@@ -358,7 +360,7 @@ print-config:
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# file used at runtime (when $LD_LIBRARY_PATH includes the build directory).
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libhts.so: $(LIBHTS_OBJS:.o=.pico)
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- $(CC) -shared -Wl,-soname,libhts.so.$(LIBHTS_SOVERSION) $(VERSION_SCRIPT_LDFLAGS) $(LDFLAGS) -o $@ $(LIBHTS_OBJS:.o=.pico) $(LIBS) -lpthread
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+ $(CC) -shared -Wl,-soname,libhts.so.$(LIBHTS_SOVERSION) $(VERSION_SCRIPT_LDFLAGS) $(LDFLAGS) -o $@ $(LIBHTS_OBJS:.o=.pico) $(LIBS) $(PTHREAD)
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ln -sf $@ libhts.so.$(LIBHTS_SOVERSION)
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# Similarly this also creates libhts.NN.dylib as a byproduct, so that programs
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@@ -370,10 +372,10 @@ libhts.dylib: $(LIBHTS_OBJS)
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ln -sf $@ libhts.$(LIBHTS_SOVERSION).dylib
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cyghts-$(LIBHTS_SOVERSION).dll libhts.dll.a: $(LIBHTS_OBJS)
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- $(CC) -shared -Wl,--out-implib=libhts.dll.a -Wl,--enable-auto-import $(LDFLAGS) -o $@ -Wl,--whole-archive $(LIBHTS_OBJS) -Wl,--no-whole-archive $(LIBS) -lpthread
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+ $(CC) -shared -Wl,--out-implib=libhts.dll.a -Wl,--enable-auto-import $(LDFLAGS) -o $@ -Wl,--whole-archive $(LIBHTS_OBJS) -Wl,--no-whole-archive $(LIBS) $(PTHREAD)
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hts-$(LIBHTS_SOVERSION).dll hts.dll.a: $(LIBHTS_OBJS)
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- $(CC) -shared -Wl,--out-implib=hts.dll.a -Wl,--enable-auto-import -Wl,--exclude-all-symbols $(LDFLAGS) -o $@ -Wl,--whole-archive $(LIBHTS_OBJS) -Wl,--no-whole-archive $(LIBS) -lpthread
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+ $(CC) -shared -Wl,--out-implib=hts.dll.a -Wl,--enable-auto-import -Wl,--exclude-all-symbols $(LDFLAGS) -o $@ -Wl,--whole-archive $(LIBHTS_OBJS) -Wl,--no-whole-archive $(LIBS) $(PTHREAD)
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hts-$(LIBHTS_SOVERSION).def: hts-$(LIBHTS_SOVERSION).dll
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gendef hts-$(LIBHTS_SOVERSION).dll
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@@ -420,7 +422,7 @@ hts-object-files: $(LIBHTS_OBJS)
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# may not be able to access libhts symbols via the main program's libhts
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# if that was dynamically loaded without an explicit RTLD_GLOBAL.
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%.so: %.pico libhts.so
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- $(CC) -shared -Wl,-E $(LDFLAGS) -o $@ $< libhts.so $(LIBS) -lpthread
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+ $(CC) -shared -Wl,-E $(LDFLAGS) -o $@ $< libhts.so $(LIBS) $(PTHREAD)
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# For programs *statically* linked to libhts.a, on macOS loading a plugin
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# linked to a shared libhts.NN.dylib would lead to conflicting duplicate
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@@ -501,16 +503,16 @@ htscodecs/htscodecs/rANS_static32x16pr_avx512.o htscodecs/htscodecs/rANS_static3
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htscodecs/htscodecs/rANS_static32x16pr_sse4.o htscodecs/htscodecs/rANS_static32x16pr_sse4.pico: TARGET_CFLAGS = $(HTS_CFLAGS_SSE4)
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annot-tsv: annot-tsv.o libhts.a
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- $(CC) $(LDFLAGS) -o $@ annot-tsv.o libhts.a $(LIBS) -lpthread
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+ $(CC) $(LDFLAGS) -o $@ annot-tsv.o libhts.a $(LIBS) $(PTHREAD)
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bgzip: bgzip.o libhts.a
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- $(CC) $(LDFLAGS) -o $@ bgzip.o libhts.a $(LIBS) -lpthread
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+ $(CC) $(LDFLAGS) -o $@ bgzip.o libhts.a $(LIBS) $(PTHREAD)
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htsfile: htsfile.o libhts.a
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- $(CC) $(LDFLAGS) -o $@ htsfile.o libhts.a $(LIBS) -lpthread
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+ $(CC) $(LDFLAGS) -o $@ htsfile.o libhts.a $(LIBS) $(PTHREAD)
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tabix: tabix.o libhts.a
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- $(CC) $(LDFLAGS) -o $@ tabix.o libhts.a $(LIBS) -lpthread
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+ $(CC) $(LDFLAGS) -o $@ tabix.o libhts.a $(LIBS) $(PTHREAD)
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annot-tsv.o: annot-tsv.c config.h $(htslib_hts_h) $(htslib_hts_defs_h) $(htslib_khash_str2int_h) $(htslib_kstring_h) $(htslib_kseq_h) $(htslib_bgzf_h) $(htslib_regidx_h) $(textutils_internal_h)
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bgzip.o: bgzip.c config.h $(htslib_bgzf_h) $(htslib_hts_h) $(htslib_hfile_h)
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